Category Archives: Workshop

The program of #VISUAL2014

We are happy to announce the program of VISUAL2014 (International Workshop on Visualizations and User Interfaces for Knowledge Engineering and Linked Data Analytics).

When: November 24, 2014
Where: Linköping, Sweden
Collocated with EKAW2014, 19th International Conference on Knowledge Engineering and Knowledge Management
Workshop URI: http://linkedscience.org/events/visual2014/
Hashtag: #VISUAL2014

Workshop Program

09:15 – 09:25: Opening
09:25 – 10:30: Session I: Ontology Visualization (Session Chair: Valentina Ivanova)
09:25 – 09:50: A Vision for Diagrammatic Ontology Engineering (full paper), Gem Stapleton, John Howse, Adrienne Bonnington, Jim Burton
09:50 – 10:15: OntoViBe – An Ontology Visualization Benchmark (full paper), Florian Haag, Steffen Lohmann, Stefan Negru, Thomas Ertl
10:15 – 10:30: Discussion Session I

10:30 – 11:00: Coffee Break

11:00 – 12:30: Session II: User-Oriented Ontology Alignment (Session Chair: Steffen Lohmann)
11:00 – 11:20: What Can the Ontology Describe? Visualizing Local Coverage in PURO Modeler (short paper), Marek Dudas, Tomas Hanzal, Vojtech Svatek
11:20 – 11:45: User Involvement for Large-Scale Ontology Alignment (full paper), Valentina Ivanova, Patrick Lambrix
11:45 – 12:00: Discussion Session II
12:00 – 12:30: Wrap Up Sessions I+II

12:30 – 14:00: Lunch Break

14:00 – 15:00: Session III: Visual Approaches to Linked Data (Session Chair: Valentina Ivanova)
14:00 – 14:25: Sensemaking on Wikipedia by Secondary School Students with SynerScope (full paper), Willem Robert Van Hage, Fernando Nunez-Serrano, Thomas Ploeger, Jesper Hoeksema
14:25 – 14:45: Towards a Visual Annotation Tool for End-User Semantic Content Authoring (short paper), Torgeir Lebesbye, Ahmet Soylu
14:45 – 15:00: Discussion Session III

15:00 – 15:30: Coffee Break

15:30 – 17:00: Session IV: Demo Jam (Session Chair: Steffen Lohmann)
15:30 – 16:30: Impromptu demos (everyone is invited to join and present)
16:30 – 17:00: Wrap Up Sessions III+IV
17:00 – End of Workshop

4th Workshop on Linked Science 2014— Making Sense Out of Data

4th Workshop on Linked Science 2014— Making Sense Out of Data (LISC2014)

We are proud to announce that we will have Dr Harith Alani from the Open University, UK as our keynote speaker for LISC2014.

Here once again the temporal and spatial coordinates for joining the Linked Science 2014 workshop:

When: October 19, 2014 (Full-day)
Where: Riva del Garda, Trentino, Italy
Collocated with the 13th International Semantic Web Conference (ISWC2014).
Workshop URI: http://linkedscience.org/events/lisc2014

You may also join remotely by following the hashtag #LISC2014.

PROGRAM

9.15 – 9.30: Opening and introduction

9.30 – 10.30: Keynote: Harith Alani (Open University)

10:30 – 11:00 Coffee break

11:00 – 12:20: Paper presentation session I: Making sense out of scholarly data

11:00 – 11:20 Hajar Ghaem Sigarchian, Ben De Meester, Tom De Nies, Ruben Verborgh, Wesley De Neve, Erik Mannens and Rik Van de Walle. EPUB3 for Integrated and Customizable Representation of a Scientific Publication and its Associated Resources

11:20 – 11:40 Angelo Di Iorio, Silvio Peroni, Fabio Vitali and Jacopo Zingoni. Semantic lenses to bring digital and semantic publishing together

11:40 – 12:00 Francesco Osborne, Silvio Peroni and Enrico Motta. Clustering Citation Distributions for Semantic Categorization and Citation Prediction

12:00 – 12:20 Olga Giraldo, Alexander Garcia and Oscar Corcho. SMART Protocols: SeMAntic RepresenTation for Experimental Protocols

12:30 – 14:00 Lunch

14:00 – 15:30 Paper presentation session II: Modelling Scientific Data

14:00 – 14:20 Laleh Kazemzadeh, Maulik Kamdar, Oya Beyan, Stefan Decker and Frank Barry. LinkedPPI: Enabling Intuitive, Integrative Protein-Protein Interaction Discovery

14:20 – 14:40 Jodi Schneider, Paolo Ciccarese, Tim Clark and Richard D. Boyce. Using the Micropublications ontology and the Open Annotation Data Model to represent evidence within a drug-drug interaction knowledge base

14:40 – 15:00 Simon Jupp, James Malone and Alasdair J. G. Gray. Capturing Provenance for a Linkset of Convenience

15:00 – 15:20 Evan Patton and Deborah McGuinness. Connecting Science Data Using Semantics and Information Extraction

15:20 – 16:00 coffee break

16:00 – 17:30 Co-writing session: how can linked science techniques help with ‘sense making out of (scientific) data’ 2+45 minutes

  • 1st 45 minutes: produce linked science matrix in breakout groups, correlating sense-making challenges and technologies used to address these challenges

  • 2nd 45 minutes: merging matrices into consensus view and/or paper ideas/blog post, by identifying common challenges, technology bridges and/or gaps

 

Announcement: program of Geographic Information Observatories 2014, Vienna

We are happy to announce the program of the Workshop on Geographic Information Observatories 2014 to be organized at GIScience 2014 on September 23rd, 2014 in Vienna:

  • 08:30 – 09:00    Registration / Welcome to GIO2014
  • 09:00 – 09:15    Intro
  • 09:15 – 10:00    Keynote I: (Chair: Ben Adams)
    • Brent Hecht.The Mining and Application of Diverse Cultural Perspectives in Volunteered Geographic Information and User-Generated Content
  • 10:00 – 10:30    Coffee break
  • 10:30 – 11:15   Paper session I (10+5min per speaker) (Chair: Grant McKenzie)
    • Andrea Ballatore. Exploring the geographic information universe: The role of search technologies
    • Benjamin Adams, Mark Gahegan, Prashant Gupta and Richard Hosking. Geographic Information Observatories for Supporting Science
    • André Bruggmann and Sara Irina Fabrikant. Spatializing a Digital Text Archive about History
  • 11:15 – 12:30    Observatory Demos and Panel (Chair: Krzysztof Janowicz)
  • 12:30 – 13:30    Lunch
  • 13:30 – 14:15    Keynote II: (Chair: Krzysztof Janowicz)
    • Sven Schade.‘Post-Normal’ Geospatial Science
  • 14:15 – 15:00    Paper session II (10+5min per speaker) (Chair: Tomi Kauppinen)
    • Auriol Degbelo and Werner Kuhn. Five General Properties of Resolution
    • Heidelinde Hobel and Andrew U. Frank. Exploiting Linked Spatial Data and Granularity Transformations
    • Bandana Kar and Rina Ghose. Is My Information Private? Geo-Privacy in the World of Social Media
  • 15:00 – 15:30    Discussion about kinds of GIO (incl. infrastructure, community involvement, funding) (Chair: Ben Adams)
  • 15:30 – 16:00    Coffee break
  • 16:00 – 17:00    Break out groups on GIO research agenda (Chair: Tomi Kauppinen)
  • 17:00 – 17:30    Wrap-up of the results of the groups / joint writing  (Chair: Grant McKenzie)
  • 18:00 – 20:00    All-Workshop Icebreaker

Registration for the workshop and the conference is now open at the GIScience2014 web site (early bird until August 11th, 2014).

The workshop on Geographic Information Observatories 2014 is organized by Krzysztof Janowicz (University of California, Santa Barbara, USA), Ben Adams (University of Auckland, NZ), Grant McKenzie (University of California, Santa Barbara, USA) and
Tomi Kauppinen (University of Bremen, Germany and Aalto University School of Science, Finland)

Making Sense of Data is the theme of Linked Science 2014

We will organize the 4th Workshop on Linked Science 2014 (LISC2014) with the focus on theme Making Sense Out of Data. LISC2014 will collocate with ISWC2014 in Riva del Garda, Trentino, Italy on October 19 or 20, 2014.

We encourage submissions on both

  1. new results through making use of semantic reasoning or
  2. making innovative combination of existing technologies (such as visualization, data mining, machine learning, and natural language processing) with Semantic Web technologies to enable better understanding of data.

LISC2014 is organized by

– Jun Zhao, Lancaster University
– Marieke van Erp, VU University Amsterdam
– Carsten Keßler, Hunter College, City University of New York
– Tomi Kauppinen, University of Bremen
– Jacco van Ossenbruggen, CWI and
– Willem Robert van Hage, SynerScope B.V.

Please check the LISC2014 pages for more information and Call for Papers.

Program of LISC2013 Sydney on October 21st, 2013 published

3rd International Workshop on Linked Science 2013—Supporting  Reproducibility, Scientific Investigations and Experiments (LISC2013)

When: October 21st, 2013
Where: Sydney Masonic Conference & Function Centre, Sydney, Australia
Collocated with the 12th International Semantic Web Conference (ISWC2013).

PROGRAM

9.00 – 10.00 Keynote by Carole Goble.

Results may vary: reproducibility, open science and all that jazz.

Abstract:
How could we evaluate research and researchers? Reproducibility underpins the scientific method: at least in principle if not practice. The willing exchange of results and the transparent conduct of research can only be expected up to a point in a competitive environment. Contributions to science are acknowledged, but not if the credit is for data curation or software. From a bioinformatics view point, how far could our results be reproducible before the pain is just too high? Is open science a dangerous, utopian vision or a legitimate, feasible expectation? How do we move bioinformatics from one where results are post-hoc “made reproducible”, to pre-hoc “born reproducible”? And why, in our computational information age, do we communicate results through fragmented, fixed documents rather than cohesive, versioned releases? In this talk, which I gave as a keynote at the 2013 joint conference Intelligent Systems in Molecular Biology / European Conference on Computational Biology, I will explore these questions drawing on 20 years of experience in both the development of technical infrastructure for Life Science and the social infrastructure in which Life Science operates.

 

10.00-10:30 Paper session I

  • Timo Willemsen, Anton Feenstra and Paul Groth. Building Executable Biological Pathway Models Automatically from BioPAX

10.30 -11.00 break

11.00 – 12.45 Paper session II

  • Guillermo Palma, Maria-Esther Vidal, Louiqa Raschid and Andreas Thor. Exploiting Semantics from Ontologies and Shared Annotations to Find Patterns in Annotated Linked Open Data
  • Cameron Mclean, Mark Gahegan and Fabiana Kubke. Capturing intent and rationale for Linked Science: design patterns as a resource for linked laboratory experiments
  • Jun Zhao, Graham Klyne, Matthew Gamble and Carole Goble. A Checklist-Based Approach for Quality Assessment of Scientific Information

12.45-13.45 Lunch

13.45-15.30 Paper session III

  • Nico Adams, Armin Haller, Alexander Krumpholz and Kerry Taylor. A Semantic Lab Notebook – Report on a Use Case Modelling an Experiment of a Microwave-based Quarantine Method
  • Niels Ockeloen, Antske Fokkens, Serge Ter Braake and Piek Vossen. BiographyNet: Managing Provenance at multiple levels and from different perspectives
  • Michiel Hildebrand, Rinke Hoekstra and Jacco van Ossenbruggen. Using Semantic Web Technologies to Reproduce a Pharmacovigelance Case Study

15.30-16.00 Break

16.00-17.30 Co-writing session: how can linked science techniques solve problems in scientific reproducibility 2+45 minutes

  • 1st 45 minutes: produce reproducibility problem/potential linked science technology matrix in breakout groups
  • 2nd 45 minutes: merging matrices into consensus view and/or paper ideas/blog post

Closing

Seven papers accepted to Linked Science 2013

We are happy to announce that we have accepted the following seven papers to be presented in the Linked Science 2013 (LISC2013)  workshop in Sydney, Australia in October 2013:

  • Timo WillemsenAnton Feenstra and Paul Groth. Building Exceutable Biological Pathway Models Automatically from BioPAX
  • Nico Adams, Armin Haller, Alexander Krumpholz and Kerry Taylor. A Semantic Lab Notebook – Report on a Use Case Modelling an Experiment of a Microwave-based Quarantine Method
  • Jun Zhao, Graham Klyne, Matthew Gamble and Carole Goble. A Checklist-Based Approach for Quality Assessment of Scientific Information
  • Michiel HildebrandRinke Hoekstra and Jacco van Ossenbruggen. Using Semantic Web Technologies to Reproduce a Pharmacovigilance Case Study
  • Guillermo Palma, Maria-Esther VidalLouiqa Raschid and Andreas Thor. Exploiting Semantics from Ontologies and Shared Annotations to Find Patterns in Annotated Linked Open Data
  • Cameron Mclean, Mark Gahegan and Fabiana Kubke. Capturing intent and rationale for Linked Science: design patterns as a resource for linked laboratory experiments
  • Niels Ockeloen, Antske Fokkens, Serge Ter Braake and Piek Vossen. BiographyNet: Managing Provenance at multiple levels and from different perspectives

On behalf of the organizing committee of LISC2013,
Tomi Kauppinen

 

Nine Papers Accepted for the Linked Science 2012

We are pleased to announce that we accepted the following papers for publication and presentation at the 2nd International Workshop on Linked Science 2012—Tackling Big Data (LISC2012):

The selection process was competitive with the acceptance rate of 47%: we received 19 submissions and accepted these 9 papers.

The 2nd International Workshop on Linked Science 2012—Tackling Big Data (LISC2012) will be held within the 11th International Semantic Web Conference (ISWC2012) in Boston, USA on November 12th, 2012.

The more detailed workshop programme will be announced in September at the workshop web pages at LinkedScience.org/events/lisc2012/ and via twitter hashtag  #LISC2012 and twitter feed @LinkedScience.

 

2nd International Workshop on Linked Science 2012—Tackling Big Data will be arranged in Boston, USA

The 2nd International Workshop on Linked Science 2012—Tackling Big Data (LISC2012) will be organized in November, 2012 in Boston, USA.

LISC2012 will be collocated with the 11th International Semantic Web Conference (ISWC2012). The submission deadline for the papers is July 31th, 2012.

Organizers of LISC2012 are

  • Tomi Kauppinen, Institute for Geoinformatics, University of Muenster, Germany. (co-chair)
  • Line C. Pouchard, Scientific Data Group, Oak Ridge National Laboratory, US Department of Energy, USA. (co-chair)
  • Carsten Keßler, Institute for Geoinformatics (ifgi), University of Muenster, Germany. (co-chair)
  • Paul Groth, VU University of Amsterdam, the Netherlands.
  • Natasha Noy, Stanford Medical Informatics, USA
  • Eric G. Stephan, U.S. Department of Energy, Pacific Northwest National Laboratory in Richland, Washington, USA
  • Jun Zhao, Life Science Interface, University of Oxford

More information is now available at the web page of the LISC2012 at LinkedScience.org/events/lisc2012.

You may also follow the twitter feed @LinkedScience and hashtag #LISC2012 for announcements and discussions.

 

Gilberto Câmara from INPE will give a keynote at GIBDA2012

 

Gilberto Câmara

Director of the National Institute for Space Research (INPE), Brazil

We are happy to announce that Gilberto Câmara, the Director of the Brazil’s National Institute for Space Research (INPE) will give a keynote  at the Workshop on GIScience in the Big Data Age 2012 (GIBDA2012) on September 18th, 2012. The workshop will be collocated with the seventh International Conference on Geographic Information Science 2012 (GIScience 2012).

Big Data Challenge

We announce a Data Challenge as a part of the Workshop on GIScience in the Big Data Age 2012 (GIBDA2012). The winner will be awarded a $250 price sponsored by 52North and will present at the workshop, in Columbus, Ohio, USA. September 18th.

Here is a description of the Data Challenge:

The website spatial.linkedscience.org/ contains a growing collection of metadata for proceedings of conferences on topics related to geographic information science. So far, it contains most of the metadata for the GIScience, COSIT, ACM GIS, and AGILE conference series. Within the GIBDA Data Challenge, we are looking for

  • innovative analyses of the data
  • interactive visualizations
  • approaches for cleaning the data up
  • pattern and topic mining
  • enrichment and interlinking with other datasets (e.g., from the Linked Data cloud)
  • insights into GIScience as research field
  • adding social roles and aspects

The raw data can be queried via SPARQL using the SPARQL endpoint  spatial.linkedscience.org/sparql. Submissions to the data challenge are to be submitted through EasyChair as a brief description of the entry, along with a link to the demo/analysis/dataset. Entries to the challenge will be evaluated by the program committee based on innovativeness and potential impact. The winner will be awarded a $250 price sponsored by 52North and will present at the workshop. Submissions due: 18. June 2012, see GIBDA2012 Workshop pages for more details.

Organizers of the Data Challenge